What is SYTO 13?

What is SYTO 13?

CYTO-13 is a fluorogenic, DNA-selective and cell-permeant dye for analyzing DNA content in living cells. CYTO-13 has its green fluorescence significantly enhanced upon binding to DNA. It can be used in fluorescence imaging, microplate and flow cytometry applications.

What does SYTO 13 stain?

SYTO-13 is a sensitive DNA stain broadly used for viability studies. SYTO-13 dye easily penetrates most cell types and undergoes dramatic fluorescence enhancement upon binding to nucleic acids. Thus, when P. carinii was incubated with SYTO-13, the nuclei from living cells were stained in green (Fig 1).

What can be a substitute for SYBR Green?

This paper confirms and extends previous findings that among commercially available DNA dyes, EvaGreen and certain SYTO dyes are the most desirable alternatives to the commonly used SYBR Green in real-time PCR.

How does SYTO 9 work?

SYTO 9 is a blue-excited (485 nm excitation maximum), green-fluorescent (498 nm DNA, 501 nm RNA emission maxima) nucleic acid stain that is cell permeable (ThermoFisherScientific). Most importantly, however, is that SYTO 9 exhibits a significant enhancement in quantum yield upon binding to nucleic acids.

What are SYTO dyes?

SYTO ® dyes are cell-permeant nucleic acid stains that show. a large fluorescence enhancement upon binding nucleic acids. The SYTO dyes can be used to stain RNA and DNA in both live. and dead eukaryotic cells, as well as in Gram-positive and Gram- neg a tive bacteria.

What is a downside of using SYBR Green for qPCR?

A drawback of SYBR green I is its lack of specificity: binding to nonspecific dsDNA in the real-time PCR reaction hampers reliable quantification of the specific product [7]. Presence of non-specific PCR products can be ruled out by performing a melting curve analysis [8].

What is the difference between Taqman and SYBR Green?

The main difference between STBR Green and Taqman is that SYBR green is a dsDNA binding dye used to detect PCR products accumulated during the PCR reaction whereas Taqman is a fluorogenic probe specific to a target gene, which accumulates during PCR.

Is SYTO 9 toxic?

As shown in Figure 1, SYTO® 9 is toxic to cells over less than half of the experimental time, whereas MycoLight™ Red JJ94 showed very minor variation from the control population.

What is the meaning of SYTO?

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What are the various dyes used in RT PCR?

The most commonly used fluorescent reporter dyes are FAM, TET (tetrachloro-6-car-boxyfluorescein), JOE (2,7-dimethoxy-4,5-dichloro-6-carboxy-fluorescein) or HEX (hexacholoro-6-carboxyfluorescein), and the most frequently used quenchers are TAMRA, DABCYL and Black Hole Quencher (BHQ).

Why is TaqMan better than SYBR Green?

Furthermore, SYBR Green has a medium specificity while Taqman has high specificity. Moreover, the reproducibility of SYBR Green is also medium while the reproducibility of Taqman is high. SYBR Green and Taqman are two chemistries used to detect PCR products in real-time PCR procedures.

What is the difference between SYBR Green and TaqMan qPCR?

Key Difference – SYBR Green vs Taqman

SYBR Green is a method based on intercalating nucleic acid staining dye while Taqman is a method based on hydrolysis probe. Both technologies are designed to generate fluorescence during the PCR, which allows real-time PCR machine to monitor the reaction in “real time”.

Why is SYBR Green better than TaqMan?

Is TaqMan more sensitive than SYBR?

The results demonstrate that both assays are reliable for determining gene expression in tung tissues and that the TaqMan assay is more sensitive but generates lower calculated expression levels than the SYBR Green assay.

Why dyes are used in PCR?

dye is used to monitor the amplification of any DNA sequences and dispenses the use of a probe, thus reducing the cost of amplification and providing a great advantage in its application.

What is the full meaning of SYBR Green?

SYBR Green

Ethidium Bromide SYBR Stains
Gel background High Low to none
Excitation 300 nm transilluminator 300 nm transilluminator
Color Pink/orange Fluorescent Green (SYBR Green) Fluorescent Gold (SYBR Gold)
Excitation-induced bleaching of the dye Yes No

What dye does TaqMan use?

SYBR™ Green dye
TaqMan-based detection
Uses Applied Biosystems™ SYBR™ Green dye (a dsDNA binding dye) to detect PCR product as it accumulates during PCR. Uses a fluorogenic probe specific to target gene to detect target as it accumulates during PCR.

Which is better SYBR Green or TaqMan?

In quantitative gene expression analysis, two methods have more popularity, SYBR Green and TaqMan, SYBR Green is relatively cost benefit and easy to use and technically based on binding the fluorescent dye to double-stranded deoxyribonucleic acid (dsDNA) where TaqMan method has more expensive and based on dual labeled …

What dye is used in PCR?

SYBR® Green
SYBR® Green is the most widely used double-strand DNA-specific dye reported for real time PCR. SYBR® Green binds to the minor groove of the DNA double helix. In the solution , the unbound dye exhibits very little fluorescence. This fluorescence is substantially enhanced when the dye is bound to double stranded DNA.

Why is Rox used in PCR?

ROX dye increases precision of technical replicates
Data normalized with ROX dye is simply more precise than data without it, enabling researchers to run fewer replicates while maintaining statistical power.

Why is SYBR Green used in PCR?

SYBR® Green for qPCR
Sso7d is a double-stranded (ds) DNA–binding protein that increases speed and processivity and increases tolerance to PCR inhibitors. SYBR® Green is a dsDNA-binding dye that intercalates nonspecifically into dsDNA, allowing measurement of the amount of PCR product.

What is the purpose of SYBR Green in qPCR?

Posted June 22, 2020. SYBR Green is one of the most commonly used fluorescent dyes in qPCR. It binds to double-stranded DNA molecules by intercalating between the DNA bases. Once intercalated to DNA, SYBR Green becomes less mobile, causing its energy to be released as fluorescence.

What are the major differences between the TaqMan and SYBR Green method of qPCR?

Taqman method uses dual-labeled probes for detection of the accumulated DNA while SYBR Green method uses a fluorescent dye. Both these methods also have different applications in molecular biology. Reference: 1.

Why is SYBR Green used?

SYBR Green I is the most commonly used fluorescent dye. It binds specifically to double-stranded DNA. Using this dye, double-stranded DNA molecules can be exclusively quantified in the presence of single-stranded DNA molecules during denaturation experiments.

What is ROX and FAM?

ROX dye is an inert fluorescent dye that can be added as one of the components in a qPCR master mix. Unlike reporter dyes such as SYBR™ Green or FAM™ dye, the fluorescence of ROX dye is not affected by amplification of the PCR product.